PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00005774-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family M-type_MADS
Protein Properties Length: 192aa    MW: 21239.4 Da    PI: 10.0002
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00005774-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-1422581147
                        HHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
              SRF-TF 11 vtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                        v+fskRr g++KKA+EL++L  +e a iifs+ gk++
  WALNUT_00005774-RA 22 VSFSKRRSGLFKKASELCTLRVVETANIIFSPGGKVF 58
                        9*********************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.2E-13463IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.488464IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.83E-15473IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-7626IPR002100Transcription factor, MADS-box
PfamPF003193.0E-142259IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-72641IPR002100Transcription factor, MADS-box
PRINTSPR004043.0E-74162IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MMNMGWKKTQ KKMTQGANAP LVSFSKRRSG LFKKASELCT LRVVETANII FSPGGKVFSS  60
GHPSAEDVIN MLGHRGKPDA ATLLEAEAHQ ERVRRDLKKQ YSDLLRQLEA EKKRGEKLEQ  120
MRMEYQGCSW FYAPIDELSL EELKVKSAAM AELKGKVLKE LEERLAQGSA PSVAANSGGS  180
SVFPVNDPKT AP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002531994.23e-46PREDICTED: agamous-like MADS-box protein AGL29 isoform X1
TrEMBLB9T1681e-45B9T168_RICCO; Mads box protein, putative
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1639169
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.15e-26AGAMOUS-like 62